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  5. A TIME-AND-SPACE PARALLELIZED ALGORITHM FOR THE CABLE EQUATION
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A TIME-AND-SPACE PARALLELIZED ALGORITHM FOR THE CABLE EQUATION

Date Issued
August 1, 2011
Author(s)
Li, Chuan  
Advisor(s)
Vasilios Alexiades
Additional Advisor(s)
Ohannes Karakashian
Xiaobing Feng
Jack Buchanan
Permanent URI
https://trace.tennessee.edu/handle/20.500.14382/19111
Abstract

Electrical propagation in excitable tissue, such as nerve fibers and heart muscle, is described by a nonlinear diffusion-reaction parabolic partial differential equation for the transmembrane voltage $V(x,t)$, known as the cable equation. This equation involves a highly nonlinear source term, representing the total ionic current across the membrane, governed by a Hodgkin-Huxley type ionic model, and requires the solution of a system of ordinary differential equations. Thus, the model consists of a PDE (in 1-, 2- or 3-dimensions) coupled to a system of ODEs, and it is very expensive to solve, especially in 2 and 3 dimensions.


In order to solve this equation numerically, we develop an algorithm, extended from the Parareal Algorithm, to efficiently incorporate space-parallelized solvers into the framework of the Parareal algorithm, to achieve time-and-space parallelization. Numerical results and comparison of the performance of several serial, space-parallelized and time-and-space-parallelized time-stepping numerical schemes in one-dimension and in two-dimensions are also presented.

Subjects

Luo-Rudy

action potential

cable equation

parallel computing

parareal algorithm

Disciplines
Biophysics
Molecular Biology
Numerical Analysis and Computation
Numerical Analysis and Scientific Computing
Partial Differential Equations
Degree
Doctor of Philosophy
Major
Mathematics
Embargo Date
December 1, 2011
File(s)
Thumbnail Image
Name

li.pdf

Size

2.07 MB

Format

Adobe PDF

Checksum (MD5)

99a1065ac33aec19f4fb617937e0c4d6


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