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Submissions from 2013

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Acyl-homoserine lactone-based quorum sensing in the Roseobacter clade: complex cell-to-cell communication controls multiple physiologies, W Nathan Cude and Alison Buchan

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Interaction of a G protein-coupled receptor (Ste2p) of Saccharomyces cerevisiae with its ligand and its G-protein alpha subunit, Li-Yin Huang

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Genetic characterization of Toxoplasma gondii from pigs from different localities in China by PCR-RFLP, Hai-Hai Jiang, Si-Yang Huang, Dong-Hui Zhou, Xiao-Xuan Zhang, Chunlei Su, Shun-Zhou Deng, and Xing-Quan Zhu

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Insights into archaeal evolution and symbiosis from the genomes of a nanoarchaeon and its inferred crenarchaeal host from Obsidian Pool, Yellowstone National Park, Mircea Podar, Kira S. Makarova, David E. Graham, Yuri I. Wolf, Eugene V. Koonin, and Anna-Louise Reysenbach

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Complete Genome Sequence of Cyanobacterial Siphovirus KBS2A, Alise J. Ponsero, Feng Chen, Jay T. Lennon, and Steven W. Wilhelm

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Genetic characterization of Toxoplasma gondii from Qinghai vole, Plateau pika and Tibetan ground-tit on the Qinghai-Tibet Plateau, China, Xiao-Xuan Zhang, Zhong-Zi Lou, Si-Yang Huang, Dong-Hui Zhou, Wan-Zhong Jia, Chunlei Su, and Xing-Quan Zhu

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Changes in the proteomic profiles of mouse brain after infection with cyst-forming Toxoplasma gondii, Dong-Hui Zhou, Fu-Rong Zhao, Si-Yang Huang, Min-Jun Xu, Hui-Qun Song, Chunlei Su, and Xing-Quan Zhu

Submissions from 2012

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The evolution of the bacterial luciferase gene cassette (lux) as a real-time bioreporter, Dan Close, Tingting Xu, Abby Smartt, Alexandra Rogers, Robert Crossley, Sarah Price, Steven Ripp, and Gary Sayler

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Bovine serum albumin further enhances the effects of organic solvents on increased yield of polymerase chain reaction of GC-rich templates, Eric M. Farell and Gladys Alexandre

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Combined inactivation of the Clostridium cellulolyticum lactate and malate dehydrogenase genes substantially increases ethanol yield from cellulose and switchgrass fermentations, Yongchao Li, Timothy J. Tschaplinski, Nancy L. Engle, Choo Y. Hamilton, Miquel Rodriguez, James C. Liao, Christopher W. Schadt, Adam M. Guss, Yunfeng Yang, and David E. Graham

Spatial heterogeneity and underlying geochemistry of phylogenetically diverse orange and white Beggiatoa mats in Guaymas Basin hydrothermal sediments, Luke J. McKay, Barbara J. MacGregor, Jennifer F. Biddle, Daniel B. Albert, Howard P. Mendlovitz, Daniel R. Hoer, Julius S. Lipp, Karen Lloyd, and Andreas P. Teske

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Abundance of female-biased and paucity of male-biased somatically expressed genes on the mouse X-chromosome, Bjorn Reinius, Martin M. Johansson, Katarzyna J. Radomska, Edward H. Murrow, Gaurav K. Pandey, Chandrasekhar Kanduri, Rickard Sandburg, Robert W. Williams, and Elena Jazin

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Dynamics of domain coverage of the protein sequence universe, Bhanu Rekapalli, Kristin Wuichet, Gregory D. Peterson, and Igor B. Zhulin

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The influence of sample biases on estimations of marine microbial diversity, Caroline Rempe, Charles R. Budinoff, T. C. Effler, and Alison Buchan

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Plasticity of total and intracellular phosphorus quotas in Microcystis aeruginosa cultures and Lake Erie algal assemblages, Matthew A. Saxton, Robert J. Arnold, Richard A. Bourbonniere, Robert Michael L. McKay, and Steven W. Wilhelm

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Comparitive Metagenomics of Toxic Freshwater Cyanobacteria Bloom Communities on Two Continents, Morgan M. Steffen, Zhou Li, T. Chad Effler, Loren J. Hauser, Gregory L. Boyer, and Steven W. Wilhelm

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Genomic determinants of organohalide-respiration in Geobacter lovleyi, an unusual member of the Geobacteraceae, Darlene D. Wager, Laura A. Hug, Janet K. Hatt, Melissa R. Spitzmiller, Elizabeth Padilla-Crespo, Kristi M. Ritalahti, Elizabeth A. Edwards, Konstantinos T. Konstantinidis, and Frank E. Loffler

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Detection of Mycobacterium ulcerans in the Environment Predicts Prevalence of Buruli Ulcer in Benin, Heather R. Williamson, Mark E. Benbow, Lindsay P. Campbell, Christian R. Johnson, Ghislain Sopoh, Yves Barogui, Richard W. Merritt, and Pamela L. C. Small

Submissions from 2011

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A protocol for enumeration of aquatic viruses by epifluorescence microscopy using Anodisc™ 13 membranes, Charles Ryan Budinoff, Star N. Loar, Gary R. Lecleir, Steven W. Wilhelm, and Alison Buchan

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A protocol for enumeration of aquatic viruses by epifluorescence microscopy using Anodisc™ 13 membranes, Charlse R. Budinoff, Star N. Loar, Gary R. LeCleir, Steven W. Wilhelm, and Alison Buchan

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Comparison of human optimized bacterial luciferase, firefly luciferase, and green fluorescent protein for continuous imaging of cell culture and animal models, Dan M. Close, Ruth E. Hahn, Stacey S. Patterson, Seung J. Baek, Steven Ripp, and Gary S. Sayler

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In vivo bioluminescent imaging (BLI): Noninvasive visualization and interrogation of biological processes in living animals, Dan M. Close, Tingting Xu, Gary S. Sayler, and Steven Ripp

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Fnr (EtrA) acts as a fine-tuning regulator of anaerobic metabolism in Shewanella oneidensis MR-1, Claribel Cruz-Garcia, Alison E. Murray, Jorge LM. Rodrigues, Jeffrey A. Gralnick, Lee A. McCue, Margaret F. Romine, Frank E. Loffler, and James M. Tiedje

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Next-gen sequencing of multi-drug resistant Acinetobacter baumanii at Nashville General Hospital at Meharry, Leon Dent, Nahed Ismail, Steven Robinson, Gary Rogers, Siddharth Pratap, and Dana Marshall

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Killing of Targets by CD8+ T Cells in the Mouse Spleen Follows the Law of Mass Action, Vitaly V. Ganusov, Daniel L. Barber, and Rob J. De Boer

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Niche of harmful alga Aureococcus anophagefferens revealed through ecogenomics, Christopher Gobler, Dianna Berry, Sonya Dyhrman, and Steven Wilhelm

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SO2426 is a positive regulator of siderophore expression in Shewanella oneidensis MR-1, Kristene L. Henne, Xiu-Feng Wan, Wei Wei, and Dorothea K. Thompson

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Dependence of the Cyanobacterium Prochlorococcus on Hydrogen Peroxide Scavenging Microbes for Growth at the Ocean's Surface, J Jeffrey Morris, Zackary I. Johnson, Martin J. Szul, Martin Keller, and Erik R. Zinser

Submissions from 2010

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Autonomous Bioluminescent Expression of the Bacterial Luciferase Gene Cassette (lux) in a Mammalian Cell Line, Dan M. Close, Stacey S. Patterson, Steven Ripp, Seung J. Baek, John Sanseverino, and Gary S. Sayler

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T-RFPred: a nucleotide sequence size prediction tool for microbial community description based on terminal-restriction fragment length polymorphism chromatograms, Antonio Fernandez-Guerra, Alison Buchan, Xiaozhen Mou, Emilio O. Casamayor, and Jose M. Gonzalez

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Viruses in aquatic ecosystems: important advancements of the last 20 years and prospects for the future in the field of microbial oceanography and limnology, S. Jacquet, T. Miki Takeshi, R. Nobel, P. Peduzzi, and S.W. Wilhelm

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The microbial carbon pump in the ocean, N. Jiao, G.J. Herndl, D. Hansell, R. Benner, G. Kattner, S.W. Wilhelm, D.L. Kirchman, M.G. Weinbauer, T. Luo, F. Chen, and F. Azam

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Spatial Structure and Activity of Sedimentary Microbial Communities Underlying a Beggiatoa spp. Mat in a Gulf of Mexico Hydrocarbon Seep, Karen Lloyd, Daniel B. Albert, Jennifer F. Biddle, Jeffrey P. Chanton, Oscar Pizarro, and Andreas Teske

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Naïve T Cells Re-Distribute to the Lungs of Selectin Ligand Deficient Mice, Thandi M. Onami and John R. Harp

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Profiling the culprits of destructive brown tides: analyses of the complete chloroplast genome sequences of Aureococcus anophagefferens CCMP1984 and Aureombra lagunensis CCMP1507, H.C. Ong, S.W. Wilhelm, C.J. Gobler, G.S. Bullerjahn, M.A. Jacobs, G. Rocap, and R.A. Cattolico

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The construction and analysis of marker gene libraries, S.M. Short, F. Chen, and Steven Wilhelm

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Coupling metabolism and chemotaxis-dependent behaviours by energy taxis receptors, University of Tennessee - Knoxville

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Determining rates of virus production in aquatic systems by the virus reduction approach,, M.G. Weinbauer, J.M. Rowe, and Steven Wilhelm

Submissions from 2009

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Identifying the source of unknown microcystin genes and predicting microcystin variants by comparing genes within uncultured cyanobacterial cells, C.J. Allender, G.R. LeCleir, J.M. Rinta-Kanto, R.L. Small, M.F. Satchwell, G.L. Boyer, and Steven Wilhelm

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PAH biodegradative genotypes in Lake Erie sediments: Evidence for broad geographical distribution of pyrene-degrading Mycobacteria, J.M. DeBruyn, T. Mead, S.W. Wilhelm, and G.S. Sayler

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The Effects of Increased pCO2 and Temperature on the North Atlantic Spring Bloom: I. The Phytoplankton Community and Biogeochemical Response, Y. Feng, C.E. Hare, K. Leblanc, J.M. Rose, Y Zhang, G.R. DiTullio, P. Lee, Steven Wilhelm, J.M. Rowe, J. Sun, N. Nemcek, C. Gueguen, U. Passow, I. Benner, C. Brown, and D.A. Hutchins

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The Effects of Increased pCO2 and Temperature on the North Atlantic Spring Bloom: I. The Phytoplankton Community and Biogeochemical Response, Y. Feng, C.E. Hare, K. Leblanc, J.M. Rose, Y. Zhang, G.R. DiTullio, P. Lee, S.W. Wilhelm, J.M. Rowe, J. Sun, N. Nemcek, C. Guegen, U. Passow, I. Benner, C. Brown, and D.A. Hutchins

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The response of the virus community to a mesoscale iron fertilization in the sub-Arctic Pacific Ocean, J.L. Higgins, I. Kudo, J. Nishioka, A. Tsuda, and S.W. Wilhelm

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Metabolic variability in seafloor brines revealed by carbon and sulphur dynamics, Samantha B. Joye, Vladimir A. Samarkin, Beth! N. Orcutt, Ian R. MacDonald, Kai-Uwe Hinrichs, Marcus Elvert, Andreas P. Teske, Karen Lloyd, Mark A. Lever, Joseph P. Montoya, and Christof D. Meile

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Distribution of calcifying and silicifying phytoplankton in relation to environmental and biogeochemical parameters during the late stages of the 2005 North East Atlantic Spring Bloom, K. Leblanc, C.E. Hare, Y. Feng, G.M. Berg, G.R. DiTullio, A. Neeley, I. Benner, C. Sprengel, A. Beck, S.A. Sanudo-Wilhemy, U. Passow, K. Klinck, J.M. Rowe, Steven Wilhelm, C.W. Brown, and D.A. Hutchins

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Effects of increased pCO2 and temperature on the North Atlantic Spring Bloom: III. Dimethylsulfoniopropionate, P.A. Lee, J.R. Rudisill, A.R. Neeley, D.A. Hutchins, Y. Feng, C.E. Hare, K. Leblanc, J.M. Rose, Steven Wilhelm, J.M. Rowe, and G.R. DiTullio

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Feeling manipulated: cytomegalovirus immune manipulation, Mindy Miller-Kittrell and Tim E. Sparer

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Feeling Manipulated: Cytomegalovirus Immune Manipulation, Mindy Miller-Kittrell and Time E. Sparer

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Role of chromodomain helicase DNA-binding protein 2 in DNA damage response signaling and tumorigenesis., Thandi M. Onami, P. Nagarajan, S. Rajagopalan, S. Kania, R. Donnell, and S. Venkatachalam

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The generation of influenza-specific humoral responses is impaired in ST6Gal I-deficient mice., Thandi M. Onami, J Zeng, H. M. Joo, B. Rajini, J. P. Wrammert, and M. Y. Sangster

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Lake Erie Microcystis: relationship between microcystin production, dynamics of genotypes and environmental parameters in a large lake, J.M. Rinta-Kanto, J.M. DeBruyn, E.A. Konopko, R.A. Bourbonniere, G.L. Boyer, and S.W. Wilhelm

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The diversity and distribution of toxigenic Microcystis spp. In present day and archived pelagis and sediment samples from Lake Erie, J.M. Rinta-Kanto, M.A. Saxton, J.M. DeBruyn, J.L. Smith, C.H. Marvin, K.A. Krieger, G.S. Sayler, G.L. Boyer, and S.W. Wilhelm

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Actinorhodopsin genes discovered diverse in freshwater habitats and among cultivated Actinobacteria, A.K. Sharma, K. Sommerfeld, G.S. Bullerjahn, A.R. Matteson, Steven Wilhelm, J. Jezbera, U. Brandt, W.F. Doolittle, and M.W. Hahn

Submissions from 2008

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Isolation of a non-phage-like lytic virus infecting Aureococcus anophagefferens, J.M. Rowe, J.R. Dunlap, C.J. Gobler, O.R. Anderson, M.D. Gastrich, and S.W. Wilhelm

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Freshwater and marine virioplankton: a brief overview of commonalities and differences, S.W. Wilhelm and A.R. Matteson

Submissions from 2007

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Systemic and mucosal infection program protective memory CD8 T cells in the vaginal mucosa., Thandi M. Onami, P. K. Suvas, H. M. Dech, and J. Zeng

Submissions from 2006

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Soluble fibrin inhibits monocyte adherence and cytotoxicity against tumor cells: implications for cancer metastasis, John Biggerstaff, Brandy Weidow, Jacqueline Vidosh, Judith Dexheimer, Shonak Patel, and Pretesh Patel

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An anaerobic methane oxidizing community of ANME-1b archaea in hypersaline Gulf of Mexico sediments, Karen Lloyd, Laura Lapham, and Andreas Teske

Submissions from 2005

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Methanogen Diversity Evidenced by Molecular Characterization of Methyl Coenzyme M Reductase A (mcrA) Genes in Hydrothermal Sediments of the Guaymas Basin, Ashita Dhillon, Mark Lever, Karen Lloyd, Daniel B. Albert, Mitchell L. Sogin, and Andreas Teske

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Effects of Dissolved Sulfide, pH, and Temperature on Growth and Survival of Marine Hyperthermophilic Archaea, Karen Lloyd, Virginia P. Edgcomb, Stephen J. Molyneaux, Simone Böer, Carl O. Wirsen, Michael S. Atkins, and Andreas Teske

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Lack of antigen-specific tissue remodeling in mice deficient in the macrophage galactose-type calcium-type lectin 1/CD301a., Thandi M. Onami, K. Sato, Y. Imai, N. Higashi, Y. Kumamoto, S. M. Hedrick, and T. Irimura

Submissions from 2004

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Sulfide Ameliorates Metal Toxicity for Deep-Sea Hydrothermal Vent Archaea, Virginia P. Edgcomb, Stephen J. Molyneaux, Mak A. Saito, Karen Lloyd, Simone Böer, Carl O. Wirsen, Michael S. Atkins, and Andreas Teske

Submissions from 2003

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CD43 modulates severity and onset of experimental autoimmune encephalomyelitis., Thandi M. Onami, M. L. Ford, A. Sperling, R. Ahmed, and B. D. Evavold

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TCR Signal Transduction in Antigen-Specific Memory CD8 T Cells, Thandi M. Onami, Ellen N. Kersh, Susan M. Kaech, Miriana Moran, E. John Wherry, M. Carrie Miceli, and Rafi Ahmed

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Primary and Secondary Immunocompetence in Mixed Allogeneic Chimeras, Thandi M. Onami, M. A. Williams, A. B. Adams, M. B. Walsh, N. Shirasugi, T. C. Pearson, R. Ahmed, and C. P. Larsen

Submissions from 2002

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Dynamic Regulation of T Cell Immunity by CD43, Thandi M. Onami, L. E. Harrington, M. A. Williams, M. Galvan, C. P. Larsen, T. C. Pearson, N. Manjunath, L. G. Baum, B. D. Pearce, and R. Ahmed

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Generation of Mice Deficient for Macrophage Galactose- and N-Acetylgalactosamine-Specific Lectin: Limited Role in Lymphoid and Erythroid Homeostasis and Evidence for Multiple Lectins, Thandi M. Onami, M. Y. Lin, D. M. Page, S. A. Reynolds, C. D. Katayama, J. D. Marth, T. Irimura, A. Varki, N. Varki, and S. M. Hedrick

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Molecular Cloning and Characterization of a Novel Mouse Macrophage C-type Lectin, mMGL2, Which Has a Distinct Carbohydrate Specificity from mMGL1, Thandi M. Onami, M. Tsuiji, M. Fujimori, Y. Ohashi, N. Higashi, S. M. Hendrick, and T. Irimura

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Cutting Edge: Persistent Viral Infection Prevents Tolerance Induction and Escapes Immune Control Following CD28/CD40 Blockade-based Regimen, Thandi M. Onami, M. A. Williams, A. B. Adams, M. M. Durham, T. C. Pearson, R. Ahmed, and C. P. Larsen